For that, I have two agents, one for a dask queue and one for a normal process queue. Should I update this to two pools? Im not quite sure on the appropriate/desired way to use pools vs queues

As another thing, the doco says “If the work pool does not exist, it will be created.” so to align that with your comment, does that mean its supposed to be talking about queues there as well, or will it autocreate both?

As for whether to update to two pools...it depends on your needs. The nice thing about pools is that you can set a flow concurrency limit for the entire pool, and set a different priority for each queue within the pool to avoid a scenario where you've hit your concurrency limit, and high priority flows don't run because there are too many low priority flows queued up in front of them. That's not always needed, though. If your current setup works the way you need it to, I think it's fine to just leave both queues in the same pool.