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I have setup docker and Prefect on remote on-premise server.
How should I keep the Prefect server with docker agent always running?

Yes it needs to be on to orchestrate things

Can this help keep the server on local machine running
<https://docs.prefect.io/orchestration/server/deploy-local.html#ui-configuration>

Using supervisor to keep both agent and server running
<https://docs.prefect.io/orchestration/agents/local.html#using-with-supervisor>

You can run the agent in detached mode with `-d`. Yes supervisor for the agent