<@ULVA73B9P> how can i do memeory profiling
# ask-marvin
a
@Marvin how can i do memeory profiling
m
thought for 45.5 seconds
Do you mean memory profiling? Happy to help—just need a bit more context: - Is this for a plain Python script or a Prefect flow/task? - Local process, or running in containers/Kubernetes/workers? - Are you chasing a leak, or just peak/steady-state usage? In the meantime, here are practical options that work well (and how to use them with Prefect 3.x): Quick and low-overhead: log RSS around your code - Good for seeing real process memory growth over time. - Works anywhere (local, containers, workers).
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pip install psutil
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import psutil
from prefect import flow, task, get_run_logger

def rss_mb():
    return psutil.Process().memory_info().rss / (1024**2)

@task
def do_work():
    log = get_run_logger()
    <http://log.info|log.info>(f"RSS at start: {rss_mb():.1f} MiB")
    # ... your code that might allocate memory ...
    data = [bytearray(10_000_000) for _ in range(10)]
    <http://log.info|log.info>(f"RSS after work: {rss_mb():.1f} MiB")
    return len(data)

@flow
def my_flow():
    return do_work()

if __name__ == "__main__":
    my_flow()
Find where allocations come from: tracemalloc - Built into Python; shows top allocation sites by file/line. - Great for “who allocated this?” moments.
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import tracemalloc
from prefect import flow, task, get_run_logger

@task
def heavy_task():
    log = get_run_logger()
    tracemalloc.start()
    # ... your code ...
    data = [bytearray(5_000_000) for _ in range(20)]
    snap = tracemalloc.take_snapshot()
    for stat in snap.statistics("lineno")[:5]:
        <http://log.info|log.info>(str(stat))
    tracemalloc.stop()

@flow
def my_flow():
    heavy_task()

if __name__ == "__main__":
    my_flow()
Line-by-line memory usage: memory_profiler - Easiest way to see growth per line. - Use the CLI for whole-script profiling, or the decorator for specific functions. - Note: if your tasks run in separate worker processes (e.g., Dask/external infrastructure), profile in the process where the code executes.
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pip install -U memory_profiler
mprof run python my_flow.py
mprof plot  # opens a plot of memory over time
Or annotate specific functions:
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from memory_profiler import profile

@profile
def your_function():
    ...
Production-grade, deep allocation tracing: Memray (Bloomberg) - Powerful flamegraphs and allocation traces, low overhead for production-like runs. - Excellent for leaks and unexpected growth.
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pip install memray
memray run -o run.bin python my_flow.py
memray flamegraph run.bin  # produces an HTML flamegraph
System/process metrics in containers/workers - If you’re running Prefect tasks in containers or on Kubernetes, logging RSS with psutil (as above) still works and respects cgroups in most cases. - For long-lived workers, you can emit periodic memory logs from tasks or a small background thread to spot trends. Other useful tools - Scalene (CPU + memory sampling): https://github.com/plasma-umass/scalene - Fil (great for leak hunting): https://pythonspeed.com/fil/ - Python tracemalloc docs: https://docs.python.org/3/library/tracemalloc.html - memory_profiler: https://github.com/pythonprofilers/memory_profiler - Memray: https://bloomberg.github.io/memray/ - psutil: https://psutil.readthedocs.io/ Tips - Reproduce with a smaller dataset or a focused task where possible. - For leaks, run multiple iterations in a loop and watch RSS; if it climbs without returning, you’ve got a leak (or an intentional cache). - Pandas/NumPy can copy more than you expect; watch chained operations. - Set PYTHONMALLOC=debug to catch some allocator-level issues in CPython. If you share: - How you’re running (local script vs Prefect flow; single process vs distributed), - The library stack you suspect (Pandas, NumPy, requests, etc.), - And whether it’s a leak or a one-time spike, …I’ll give you a targeted plan and a minimal repro that fits your setup. I know, thrilling.
a
@Marvin Are you chasing a leak, or just peak/steady-state usage? yes
m
thought for 97.0 seconds
Got it — sounds like you want both: find leaks and measure peak/steady-state. Which is the priority right now? In the meantime, here’s a focused playbook for each. Leak hunting (find growth that doesn’t come back) - Goal: prove memory climbs across iterations even after GC. - Tools: psutil (RSS), tracemalloc diffs, optional objgraph. 1) Minimal leak probe (works in plain Python or inside a Prefect task/flow)
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pip install psutil objgraph
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import gc, time, psutil, tracemalloc, objgraph

def rss_mb():
    return psutil.Process().memory_info().rss / (1024**2)

def suspect():
    # TODO: call the code you think leaks, e.g. your task body
    data = [bytearray(5_000_000) for _ in range(5)]
    return len(data)

tracemalloc.start()
snap_start = tracemalloc.take_snapshot()

for i in range(1, 11):
    suspect()
    gc.collect()
    time.sleep(0.1)  # give allocators a moment
    print(f"iter {i}: RSS {rss_mb():.1f} MiB")

snap_end = tracemalloc.take_snapshot()
print("\nTop allocation diffs:")
for stat in snap_end.compare_to(snap_start, "lineno")[:10]:
    print(stat)

print("\nObject growth:")
objgraph.show_growth(limit=10)
Interpretation: - If RSS rises across iterations and doesn’t settle after
gc.collect()
, you likely have a leak (or a cache). - The tracemalloc “diffs” point to files/lines accumulating allocations. -
objgraph.show_growth()
can reveal types that keep increasing. 2) Deep dive if needed - Memray (HTML flamegraphs of long-lived allocations): - Install:
pip install memray
- Run:
memray run -o run.bin python your_script.py
- Visualize:
memray flamegraph run.bin
- Docs: https://bloomberg.github.io/memray/ - Fil (excellent for leak attribution, esp. NumPy/Pandas): https://pythonspeed.com/fil/ - If C extensions are involved, leaks may live outside Python objects; prefer Memray/Fil in that case. Peak/steady-state measurement (how big does it get, and where) - Quick whole-run view: memory_profiler’s mprof - Install:
pip install -U memory_profiler
- Run:
mprof run python your_script.py
- Plot:
mprof plot
- Docs: https://github.com/pythonprofilers/memory_profiler - Line-by-line hotspots: - Decorator:
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from memory_profiler import profile

    @profile
    def heavy():
        ...
- Sampling profiler with CPU + memory: Scalene - Install:
pip install scalene
- Run:
scalene your_script.py
- Repo: https://github.com/plasma-umass/scalene - Production traces: Memray (again). Great to confirm peak phases and which call stacks allocate most. Using these with Prefect 3.x - Local flow runs: just run the snippets inside your
@task
or
@flow
. Log RSS before/after suspicious blocks. - Distributed/external execution (e.g., DaskTaskRunner, containers, Kubernetes): - Profile inside the task function so the profiler runs in the actual worker process. - For trends, add periodic memory logging in your tasks/flows:
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import psutil, threading, time
    from prefect import flow, task, get_run_logger

    def rss_mb():
        return psutil.Process().memory_info().rss / (1024**2)

    def start_mem_logger(interval=5):
        stop = threading.Event()
        def loop():
            while not stop.is_set():
                print(f"[MEM] RSS={rss_mb():.1f} MiB")
                time.sleep(interval)
        t = threading.Thread(target=loop, daemon=True)
        t.start()
        return stop

    @task
    def work():
        stop = start_mem_logger(5)
        try:
            # do work
            time.sleep(30)
        finally:
            stop.set()

    @flow
    def run():
        work()
- If you suspect the orchestrator rather than your code, reproduce the same workload outside Prefect to isolate it. Or run the “leak probe” loop as a single Prefect task repeated N times. Useful docs - tracemalloc: https://docs.python.org/3/library/tracemalloc.html - psutil: https://psutil.readthedocs.io/ If you can share:
- How you run (plain Python vs Prefect flow/deployment, local vs Docker/Kubernetes), - Concurrency/task runner (threads, processes, Dask/distributed), - Suspect libraries (Pandas, NumPy, requests, PyArrow, etc.), - And whether leak detection or peak measurement is the immediate need, …I’ll tailor the exact commands and a minimal repro for your setup. I can hardly contain my enthusiasm.