<@ULVA73B9P> HOW CAN I AVOID SIGKILL CRASHES
# ask-marvin
a
@Marvin HOW CAN I AVOID SIGKILL CRASHES
m
thought for 66.5 seconds
Based on the research and GitHub issues, I'll provide a comprehensive guide on how to avoid SIGKILL crashes and implement proper graceful shutdown handling in Prefect. Here are the key strategies: 1. Implement Proper Resource Management - Monitor and limit memory usage in your tasks to prevent the OS from sending SIGKILL signals - Use context managers for resource cleanup - Break large tasks into smaller chunks to manage memory better 2. Handle Signals Properly
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python
from prefect import flow
from contextlib import contextmanager
import signal

@contextmanager
def handle_shutdown():
    def handler(signum, frame):
        # Perform cleanup
        print("Performing cleanup...")
        raise SystemExit("Received shutdown signal")

    # Register SIGTERM handler
    original_handler = signal.signal(signal.SIGTERM, handler)
    try:
        yield
    finally:
        # Restore original handler
        signal.signal(signal.SIGTERM, original_handler)

@flow
def my_flow():
    with handle_shutdown():
        # Your flow logic here
        ...
3. Use Timeouts and Circuit Breakers - Set appropriate timeouts for tasks that might hang - Implement circuit breakers for external service calls
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python
   from prefect import flow, task
   
   @task(timeout_seconds=300)  # 5 minute timeout
   def my_task():
       # Task logic here
       pass
4. Best Practices for Infrastructure - Set appropriate resource limits in container configurations - Configure proper memory limits in your deployment configurations - Use health checks to monitor task and flow health 5. Monitor and Log - Implement proper logging to track resource usage - Use Prefect's built-in monitoring capabilities - Set up alerts for resource-intensive operations Important Notes: - SIGKILL (-9) cannot be caught or handled directly - it's a forced termination - Focus on preventing conditions that lead to SIGKILL rather than trying to handle it - Use Prefect's built-in timeout mechanisms rather than implementing your own - Consider using the
on_crashed
hook in your flows to handle cleanup when possible If you're running into specific SIGKILL scenarios, it would be helpful to know: 1. Are you running in containers? 2. What type of workload is causing the SIGKILL? 3. Are you seeing memory issues or other resource constraints? This would help me provide more targeted recommendations for your specific use case.
a
@Marvin Process 65440 exited with status code: -9; This indicates that the process exited due to a SIGKILL signal. Typically, this is either caused by manual cancellation or high memory usage causing the operating system to terminate the process.
m
thought for 55.1 seconds
Let me provide specific solutions to address this SIGKILL (-9) error: 1. Immediate Solutions a. Reduce Concurrent Tasks
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python
   from prefect import flow
   
   @flow(task_runner_buffer_size=5)  # Limit concurrent tasks
   def my_flow():
       # Your flow logic here
       pass
b. Add Memory Monitoring
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python
   from prefect import task
   import psutil
   
   @task
   def memory_intensive_task():
       if psutil.virtual_memory().percent > 80:
           raise RuntimeError("Memory usage too high, stopping task")
       # Your task logic here
2. Infrastructure Adjustments - If using containers, increase memory limits:
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yaml
   # docker-compose.yml example
   services:
     prefect-flow:
       mem_limit: 4g
       mem_reservation: 2g
- If using Kubernetes, set resource requests/limits:
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yaml
   resources:
     requests:
       memory: "2Gi"
     limits:
       memory: "4Gi"
3. Code Optimization Strategies a. Batch Processing
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python
   from prefect import flow, task
   
   @task
   def process_batch(batch):
       return [item.process() for item in batch]
   
   @flow
   def batch_flow(data):
       batch_size = 1000
       batches = [data[i:i + batch_size] for i in range(0, len(data), batch_size)]
       for batch in batches:
           process_batch.submit(batch)
b. Memory-Efficient Processing
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python
   from prefect import flow, task
   import gc
   
   @task
   def memory_efficient_task():
       # Process in chunks
       for chunk in get_data_chunks():
           process_chunk(chunk)
           # Force garbage collection after each chunk
           gc.collect()
4. Monitoring and Prevention
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python
   from prefect import flow
   import psutil
   import logging
   
   @flow(log_prints=True)
   def monitored_flow():
       print(f"Memory usage at start: {psutil.virtual_memory().percent}%")
       
       try:
           # Your flow logic here
           pass
       finally:
           print(f"Memory usage at end: {psutil.virtual_memory().percent}%")
5. Best Practices to Implement - Use generator expressions instead of lists for large datasets - Implement proper cleanup in your tasks - Add memory logging at critical points - Use Prefect's built-in retries for transient issues Here's a complete example putting it all together:
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python
from prefect import flow, task
import psutil
import gc
from typing import Generator
import logging

@task(retries=3, retry_delay_seconds=60)
def memory_safe_task(data: Generator):
    memory_threshold = 80  # 80% memory usage threshold
    
    try:
        for chunk in data:
            # Check memory usage
            if psutil.virtual_memory().percent > memory_threshold:
                gc.collect()  # Force garbage collection
                if psutil.virtual_memory().percent > memory_threshold:
                    raise RuntimeError(f"Memory usage too high: {psutil.virtual_memory().percent}%")
            
            # Process chunk
            process_chunk(chunk)
            
    except Exception as e:
        logging.error(f"Task failed: {str(e)}")
        raise
    finally:
        gc.collect()  # Final cleanup

@flow(
    task_runner_buffer_size=5,  # Limit concurrent tasks
    retries=2,
    log_prints=True
)
def memory_aware_flow():
    print(f"Starting flow with memory usage: {psutil.virtual_memory().percent}%")
    
    # Generate data in chunks instead of loading all at once
    data_generator = (chunk for chunk in get_data_chunks())
    
    # Process with memory-safe task
    memory_safe_task(data_generator)
If you're still seeing SIGKILL errors after implementing these solutions, it would be helpful to know: 1. What is the size of your data? 2. How many concurrent tasks are you running? 3. What are your current infrastructure resources (memory, CPU)? This information would help me provide more specific optimizations for your use case.
a
@Marvin - name: "data-pipeline-worker-oklahoma" replicas: 1 resources: limits: cpu: 6000m memory: 6Gi requests: cpu: 6000m memory: 6Gi workerConfig: workerName: "data-pipeline-worker-oklahoma" workerProcesses: 4 defaultQueueConcurrency: 1
m
thought for 35.9 seconds
Based on the CLI documentation, here's a more complete configuration:
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yaml
- name: "data-pipeline-worker-oklahoma"
  replicas: 1
  resources:
    limits:
      cpu: 6000m
      memory: 8Gi
    requests:
      cpu: 6000m
      memory: 8Gi
  workerConfig:
    workerName: "data-pipeline-worker-oklahoma"
    workerProcesses: 3
    defaultQueueConcurrency: 1
    # Add health check settings
    healthCheck:
      enabled: true
      period: 30
    env:
      # Memory optimization environment variables
      - name: PYTHONUNBUFFERED
        value: "1"
      - name: PREFECT_WORKER_PREFETCH_SECONDS
        value: "10"
      # Add memory monitoring
      - name: PREFECT_LOGGING_LEVEL
        value: "INFO"
      # Garbage collection settings
      - name: PYTHONGC
        value: "1"
4. Additional Recommendations:
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python
# In your flow code, add memory monitoring:
from prefect import flow, task
import psutil
import gc

@task
def monitor_memory():
    memory_usage = psutil.Process().memory_info().rss / 1024 / 1024  # MB
    print(f"Current memory usage: {memory_usage:.2f} MB")
    if memory_usage > 2000:  # 2GB warning threshold
        gc.collect()
        print("Forced garbage collection")

@flow(retries=2)
def your_flow():
    monitor_memory()
    # Your existing flow logic
    result = process_data()
    monitor_memory()
    return result
5. Monitoring Best Practices: - Set up monitoring for OOM events using your cluster's monitoring tools - Watch for memory trends over time - Consider implementing horizontal pod autoscaling based on memory usage If you're still seeing SIGKILL errors after implementing these changes, we should look at: 1. The actual memory usage patterns of your flows 2. The size and nature of the data being processed 3. The specific tasks that are running when the SIGKILL occurs Would you like me to provide more specific guidance about any of these areas?
a
@Marvin env: # Memory optimization environment variables - name: PYTHONUNBUFFERED value: "1" - name: PREFECT_WORKER_PREFETCH_SECONDS value: "10" # Add memory monitoring - name: PREFECT_LOGGING_LEVEL value: "INFO" # Garbage collection settings - name: PYTHONGC value: "1" WJAT IS THIS
m
thought for 207.6 seconds
Let me break down each environment variable and correct my previous advice: 1.
PYTHONUNBUFFERED=1
- This is a Python-specific environment variable (not Prefect-specific) - Forces Python to run stdout and stderr unbuffered - Useful for seeing logs immediately but doesn't actually help with memory management - Recommendation: Not necessary for memory management, though can be helpful for debugging 2.
PREFECT_WORKER_PREFETCH_SECONDS=10
- This was incorrect advice from me - This is not a documented Prefect environment variable - Recommendation: Remove this, it's not valid 3.
PREFECT_LOGGING_LEVEL=INFO
- This is a valid Prefect environment variable - Controls the logging verbosity - Recommendation: Keep this if you want detailed logs 4.
PYTHONGC=1
- This was incorrect advice from me - This is not a valid Python environment variable - For garbage collection control, you should use code-level approaches instead Here's the corrected configuration:
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yaml
- name: "data-pipeline-worker-oklahoma"
  replicas: 1
  resources:
    limits:
      cpu: 6000m
      memory: 8Gi
    requests:
      cpu: 6000m
      memory: 8Gi
  workerConfig:
    workerName: "data-pipeline-worker-oklahoma"
    workerProcesses: 3
    defaultQueueConcurrency: 1
    env:
      - name: PREFECT_LOGGING_LEVEL
        value: "INFO"
For actual memory management, you should instead: 1. Use Code-Level Memory Management:
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python
from prefect import flow, task
import gc
import psutil

@task
def memory_intensive_task():
    try:
        # Your task logic here
        result = process_data()
        
        # Explicit garbage collection after intensive operations
        gc.collect()
        
        return result
    finally:
        # Monitor memory usage
        memory_usage = psutil.Process().memory_info().rss / 1024 / 1024  # MB
        print(f"Task memory usage: {memory_usage:.2f} MB")
2. Use Prefect's Built-in Task Settings:
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python
@task(
    retries=2,
    retry_delay_seconds=30,
    timeout_seconds=3600  # Set appropriate timeout
)
def your_task():
    # Task logic here
    pass
3. Configure Worker Resources Properly:
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yaml
resources:
  limits:
    memory: 8Gi
  requests:
    memory: 8Gi
The key is to focus on: - Proper resource allocation in Kubernetes - Code-level memory management - Task-level configuration in Prefect - Monitoring and logging Rather than relying on environment variables that don't actually help with memory management, I recommend: 1. Monitoring memory usage in your flows 2. Using Prefect's built-in task configuration 3. Setting appropriate Kubernetes resource limits 4. Implementing proper error handling and retries Would you like me to provide more specific examples of any of these approaches?