Kaleb King
03/14/2025, 5:08 PMextract_query
and I want to use pandas.read_sql
.Marvin
03/14/2025, 5:08 PMSqlAlchemyConnector
block in Prefect and execute a query with pandas.read_sql
, you'll need to follow these steps. Here's a basic example assuming you're using Prefect 3.x:
1. Install the prefect-sqlalchemy
package if you haven't already. This package provides the necessary blocks and integrations for SQLAlchemy.
bash
pip install prefect-sqlalchemy
2. Register the block types in the Prefect environment. This step ensures that the SqlAlchemyConnector
is available for use.
3. Save your database credentials to a block using Prefect's UI or code. You need to have a block saved to use the load
method.
4. Load the block and execute the query. Here's a code snippet to demonstrate this:
python
from prefect import flow
from prefect_sqlalchemy import SqlAlchemyConnector
import pandas as pd
@flow
def execute_sql_query():
# Load the SqlAlchemyConnector block
connector = SqlAlchemyConnector.load("your-connector-block-name")
# Use the connector to execute a query
with connector.get_connection() as engine:
df = pd.read_sql("SELECT * FROM your_table", con=engine)
print(df)
execute_sql_query()
In this example, replace "your-connector-block-name"
with the name of your saved block and "SELECT * FROM your_table"
with your actual query stored in extract_query
.
For more details, you can refer to the Prefect SQLAlchemy integration documentation.Kaleb King
03/14/2025, 5:59 PMDatabaseCredentials
still valid to use instead of SqlAlchemyConnector
?Marvin
03/14/2025, 6:00 PMDatabaseCredentials
block isn't explicitly mentioned in the latest Prefect 3.x documentation, which suggests that it may not be the recommended approach for managing database connections in this version. Instead, the SqlAlchemyConnector
block is highlighted as the primary means to connect to databases using SQLAlchemy.
The SqlAlchemyConnector
block is designed to encapsulate the connection logic and credentials management, making it more suitable for modern Prefect workflows. It allows you to load credentials and establish connections seamlessly within your Prefect flows.
For more details, you can refer to the Prefect SQLAlchemy integration documentation.
If you have existing workflows using DatabaseCredentials
, it might be worth exploring how to migrate to the SqlAlchemyConnector
for better compatibility and support with Prefect 3.x.Kaleb King
03/14/2025, 7:44 PMError encountered when computing cache key - result will not be persisted.
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 347, in compute_key
return hash_objects(hashed_inputs, raise_on_failure=True)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\utilities\hashing.py", line 89, in hash_objects
raise HashError(msg)
prefect.exceptions.HashError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\task_engine.py", line 161, in compute_transaction_key
key = self.task.cache_policy.compute_key(
task_ctx=task_run_context,
inputs=self.parameters or {},
flow_parameters=parameters or {},
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 188, in compute_key
policy_key = policy.compute_key(
task_ctx=task_ctx,
...<2 lines>...
**kwargs,
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 357, in compute_key
raise ValueError(msg) from exc
ValueError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
This often occurs when task inputs contain objects that cannot be cached like locks, file handles, or other system resources.
To resolve this, you can:
1. Exclude these arguments by defining a custom `cache_key_fn`
2. Disable caching by passing `cache_policy=NO_CACHE`
Marvin
03/14/2025, 7:44 PMKaleb King
03/14/2025, 7:45 PMError encountered when computing cache key - result will not be persisted.
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 347, in compute_key
return hash_objects(hashed_inputs, raise_on_failure=True)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\utilities\hashing.py", line 89, in hash_objects
raise HashError(msg)
prefect.exceptions.HashError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\task_engine.py", line 161, in compute_transaction_key
key = self.task.cache_policy.compute_key(
task_ctx=task_run_context,
inputs=self.parameters or {},
flow_parameters=parameters or {},
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 188, in compute_key
policy_key = policy.compute_key(
task_ctx=task_ctx,
...<2 lines>...
**kwargs,
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 357, in compute_key
raise ValueError(msg) from exc
ValueError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
This often occurs when task inputs contain objects that cannot be cached like locks, file handles, or other system resources.
Kaleb King
03/14/2025, 7:48 PMError encountered when computing cache key - result will not be persisted.
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 347, in compute_key
return hash_objects(hashed_inputs, raise_on_failure=True)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\utilities\hashing.py", line 89, in hash_objects
raise HashError(msg)
prefect.exceptions.HashError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\task_engine.py", line 161, in compute_transaction_key
key = self.task.cache_policy.compute_key(
task_ctx=task_run_context,
inputs=self.parameters or {},
flow_parameters=parameters or {},
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 188, in compute_key
policy_key = policy.compute_key(
task_ctx=task_ctx,
...<2 lines>...
**kwargs,
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 357, in compute_key
raise ValueError(msg) from exc
ValueError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
This often occurs when task inputs contain objects that cannot be cached like locks, file handles, or other system resources.
To resolve this, you can:
1. Exclude these arguments by defining a custom `cache_key_fn`
2. Disable caching by passing `cache_policy=NO_CACHE`
Marvin
03/14/2025, 7:49 PMKaleb King
03/14/2025, 7:50 PMError encountered when computing cache key - result will not be persisted.
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 347, in compute_key
return hash_objects(hashed_inputs, raise_on_failure=True)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\utilities\hashing.py", line 89, in hash_objects
raise HashError(msg)
prefect.exceptions.HashError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\task_engine.py", line 161, in compute_transaction_key
key = self.task.cache_policy.compute_key(
task_ctx=task_run_context,
inputs=self.parameters or {},
flow_parameters=parameters or {},
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 188, in compute_key
policy_key = policy.compute_key(
task_ctx=task_ctx,
...<2 lines>...
**kwargs,
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 357, in compute_key
raise ValueError(msg) from exc
ValueError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
This often occurs when task inputs contain objects that cannot be cached like locks, file handles, or other system resources.
Kaleb King
03/14/2025, 7:50 PMError encountered when computing cache key - result will not be persisted.
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 347, in compute_key
return hash_objects(hashed_inputs, raise_on_failure=True)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\utilities\hashing.py", line 89, in hash_objects
raise HashError(msg)
prefect.exceptions.HashError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\task_engine.py", line 161, in compute_transaction_key
key = self.task.cache_policy.compute_key(
task_ctx=task_run_context,
inputs=self.parameters or {},
flow_parameters=parameters or {},
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 188, in compute_key
policy_key = policy.compute_key(
task_ctx=task_ctx,
...<2 lines>...
**kwargs,
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 357, in compute_key
raise ValueError(msg) from exc
ValueError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
This often occurs when task inputs contain objects that cannot be cached like locks, file handles, or other system resources.
Marvin
03/14/2025, 7:50 PMKaleb King
03/14/2025, 7:51 PMError encountered when computing cache key - result will not be persisted.
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 347, in compute_key
return hash_objects(hashed_inputs, raise_on_failure=True)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\utilities\hashing.py", line 89, in hash_objects
raise HashError(msg)
prefect.exceptions.HashError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\task_engine.py", line 161, in compute_transaction_key
key = self.task.cache_policy.compute_key(
task_ctx=task_run_context,
inputs=self.parameters or {},
flow_parameters=parameters or {},
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 188, in compute_key
policy_key = policy.compute_key(
task_ctx=task_ctx,
...<2 lines>...
**kwargs,
)
File "C:\Users\kaleb.king\Documents\GitHub\Data-Warehouse\venv\prefect\Lib\site-packages\prefect\cache_policies.py", line 357, in compute_key
raise ValueError(msg) from exc
ValueError: Unable to create hash - objects could not be serialized.
JSON error: Unable to serialize unknown type: <class 'snowflake.connector.cursor.SnowflakeCursor'>
Pickle error: cannot pickle '_thread.lock' object
Marvin
03/14/2025, 7:51 PMSnowflakeCursor
object for caching purposes. This is due to the cursor containing elements that are not serializable, such as a _thread.lock
object.
Here's how you can address this issue:
1. Avoid Passing Non-Serializable Objects: Ensure that non-serializable objects like database cursors are not passed as parameters to tasks or used in a way that requires serialization. Prefect attempts to cache task inputs and outputs, so anything that cannot be serialized will cause issues.
2. Extract Data Before Passing: If you need to use data from a SnowflakeCursor
, extract the data into a serializable format (e.g., a list or a Pandas DataFrame) before passing it to tasks. For example, execute the query and fetch the results into a DataFrame:
python
import pandas as pd
# Assuming `cursor` is your SnowflakeCursor
df = pd.DataFrame.from_records(cursor.fetchall(), columns=[desc[0] for desc in cursor.description])
3. Disable Caching for Specific Tasks: If caching is not essential for certain tasks, you can disable it by setting the task's cache policy to None
.
4. Custom Serialization: If you need to pass complex objects, consider implementing custom serialization logic, but this can be complex and is generally not recommended for cursors or similar objects.
For more information on Prefect's caching and serialization, you might want to explore the Prefect documentation on caching and the Prefect Snowflake integration.