Pascal Jahan Elahi (Pawsey)
01/10/2025, 7:11 AMsubprocess calls when using a SlurmCLUSTER DaskTaskRunner ? Should I invoke the subprocess with a srun explicitly?Marvin
01/10/2025, 7:11 AMDaskTaskRunner with a SlurmCluster in Prefect, you typically don't need to explicitly use srun for subprocess calls within your tasks. The DaskTaskRunner is designed to handle task distribution across the cluster using Dask's capabilities, which should manage the execution environment for you.
However, if your specific use case requires invoking subprocesses that must run under srun, you can do so within your task function. This might be necessary if the subprocess needs to be aware of the SLURM environment or if specific SLURM resources are required.
Here's a general approach:
1. Within your task function, you can use Python's subprocess module to invoke commands with srun if needed.
2. Ensure that your task runner is configured properly to submit tasks to the SLURM-managed Dask cluster.
For more detailed guidance on using DaskTaskRunner, you can refer to the Prefect Dask documentation.
If you have specific requirements or configurations for SLURM, you might need to adjust your SLURM scripts or environment variables accordingly.