An Hoang
07/24/2021, 12:59 AM--param overrides='["exp=test_exp", "dataset=test_MS", "pairs_file=test_MS_chr22.tsv"]'
and the variants but it complained about the formatKevin Kho
overrides = ["exp=test_exp", "dataset=test_MS", "pairs_file=test_MS_chr22.tsv"]
right? What error do you get? Or are the exp
, dataset
and pairs_file
things you want to set?An Hoang
07/24/2021, 1:26 AMoverrides
param to be a list of strings
Here's my command and error:
(.venv) (jupyterlab) anhoang@c2b9 /lab/corradin_biobank/FOR_AN/OVP/corradin_ovp_utils$ prefect run -n test --execute --param config_path="conf/hydra_conf" --param pairs_file=test_MS_chr22.tsv --param overrides='["exp=test_exp", "dataset=test_MS", "pairs_file=test_MS_chr22.tsv"]' --run-name test_pipeline_run_from_terminal
Invalid parameter option 'overrides=["exp=test_exp", "dataset=test_MS", "pairs_file=test_MS_chr22.tsv"]'. Expected format 'key=value'.
Kevin Kho