Noam
09/18/2024, 2:10 PMMarvin
09/18/2024, 2:11 PMAWSCredentials
block.
- Create and save an S3Bucket
block using the AWSCredentials
block.
Example:
python
from prefect_aws import S3Bucket, AWSCredentials
aws_creds = AWSCredentials(
aws_access_key_id="YOUR_ACCESS_KEY",
aws_secret_access_key="YOUR_SECRET_KEY"
)
aws_creds.save("my_aws_credentials")
s3_bucket = S3Bucket(
bucket_name="my_s3_bucket",
credentials=AWSCredentials.load("my_aws_credentials")
)
s3_bucket.save("my_s3_bucket")
You can use these blocks in your flow to interact with S3. More details can be found here.
### Prefect 3.x:
1. Setup Work Pool Configuration: For configuring Kubernetes work pools and job templates, refer to the guide here.
2. Create Blocks:
- Follow similar steps as in Prefect 2.x to create and save your blocks.
Example:
python
from prefect_aws import S3Bucket, AWSCredentials
aws_creds = AWSCredentials(
aws_access_key_id="YOUR_ACCESS_KEY",
aws_secret_access_key="YOUR_SECRET_KEY"
)
aws_creds.save("my_aws_credentials")
s3_bucket = S3Bucket(
bucket_name="my_s3_bucket",
credentials=AWSCredentials.load("my_aws_credentials")
)
s3_bucket.save("my_s3_bucket")
3. Modify Kubernetes Configuration: Add CPU requests or other needed configurations under the containers
section, as detailed here.
For additional configurations and details on setting up blocks, you can check the documentation for blocks in Prefect 3.x here.
If you have further questions or need more detailed guidance, feel free to ask!Noam
09/18/2024, 4:37 PMMarvin
09/18/2024, 4:38 PMpython
from prefect_aws import S3Bucket, AWSCredentials
# No need to provide AWS access key and secret if using IAM roles
s3_bucket = S3Bucket(bucket_name="my_s3_bucket").save("my_s3_bucket")
For more information, see Prefect S3 Integration.### Prefect 3.x: The approach is quite similar. Ensure your Kubernetes cluster is correctly configured with the necessary IAM roles. 1. Using S3Bucket Block: - Create S3Bucket block without providing explicit credentials. Example:
python
from prefect_aws import S3Bucket
# Credentials are automatically resolved via IAM roles on EKS
s3_bucket = S3Bucket(bucket_name="my_s3_bucket").save("my_s3_bucket")
For details, refer to the related example in Prefect 3.x documentation.In both versions, the key is to ensure your EKS pods have the necessary IAM roles. Then, Prefect will manage access based on these roles. If you need more detailed advice or run into specific issues, feel free to ask!
Noam
09/18/2024, 4:39 PMMarvin
09/18/2024, 4:40 PMpython
from prefect_aws import S3Bucket
# Define the S3 bucket block without credentials, as IAM roles are used
s3_bucket = S3Bucket(bucket_name="my_s3_bucket").save("my_s3_bucket")
2. Kubernetes Job Template:
Here’s an example job template with S3 bucket integration. Modify the job spec as needed.
yaml
apiVersion: batch/v1
kind: Job
metadata:
labels: "your-labels"
namespace: "your-namespace"
generateName: "your-job-name-"
spec:
ttlSecondsAfterFinished: 300
template:
spec:
parallelism: 1
completions: 1
restartPolicy: Never
serviceAccountName: "your-service-account"
containers:
- name: your-container-name
image: your-image
env:
# Use environment variables to pass block references if needed
- name: PREFECT__CONTEXT__S3_BUCKET
value: "my_s3_bucket"
resources:
requests:
cpu: "500m"
memory: "512Mi"
limits:
cpu: "1000m"
memory: "1024Mi"
### Prefect 3.x Kubernetes Job Template Example:
1. Define and Save S3 Bucket Block:
python
from prefect_aws import S3Bucket
# Define the S3 bucket block without credentials, as IAM roles are used
s3_bucket = S3Bucket(bucket_name="my_s3_bucket").save("my_s3_bucket")
2. Kubernetes Job Template:
Modify the Kubernetes job template JSON to include settings specific to your use case.
json
{
"apiVersion": "batch/v1",
"kind": "Job",
"metadata": {
"labels": "{{ labels }}",
"namespace": "{{ namespace }}",
"generateName": "{{ name }}-"
},
"spec": {
"ttlSecondsAfterFinished": "{{ finished_job_ttl }}",
"template": {
"spec": {
"parallelism": 1,
"completions": 1,
"restartPolicy": "Never",
"serviceAccountName": "your-service-account",
"containers": [
{
"name": "your-container-name",
"image": "your-image",
"env": [
{
"name": "PREFECT__CONTEXT__S3_BUCKET",
"value": "my_s3_bucket"
}
],
"resources": {
"requests": {
"cpu": "500m",
"memory": "512Mi"
},
"limits": {
"cpu": "1000m",
"memory": "1024Mi"
}
}
}
]
}
}
}
}
In the job template, substitute "your-service-account"
, "your-container-name"
, and "your-image"
with appropriate values for your use case. The env
variable PREFECT__CONTEXT__S3_BUCKET
is an example of how you might pass the S3 bucket block reference to the job.
For more information, refer to the Prefect 2.x documentation and Prefect 3.x documentation.
If you need further assistance or run into any issues, feel free to ask!Noam
09/18/2024, 4:42 PMMarvin
09/18/2024, 4:43 PMpython
from prefect_aws import S3Bucket
# Define the S3 bucket block without credentials, as IAM roles are used
s3_bucket = S3Bucket(bucket_name="my_s3_bucket").save("my_s3_bucket")
2. Reference and Use the Block in Your Flow Code:
When you want to interact with the S3 bucket in a flow, load the block and use its methods to read/write from/to the bucket.
python
from prefect import flow, task
from prefect_aws import S3Bucket
@task
def upload_data_to_s3(data: bytes, key: str):
s3_bucket = S3Bucket.load("my_s3_bucket")
s3_bucket.write(key=key, data=data)
@task
def download_data_from_s3(key: str) -> bytes:
s3_bucket = S3Bucket.load("my_s3_bucket")
return s3_bucket.read(key=key)
@flow
def my_flow():
# Example data to upload
data = b"Hello, Prefect S3!"
key = "example/key.txt"
upload_data_to_s3(data, key)
# Download and print the data
downloaded_data = download_data_from_s3(key)
print(downloaded_data.decode())
if __name__ == "__main__":
my_flow()
### Explanation:
1. Define and Save Block:
The block is defined and saved once using the S3Bucket
class, which contains the bucket configuration. When using IAM roles, the credentials are automatically resolved.
2. Tasks to Upload and Download Data:
- `upload_data_to_s3`: This task uploads data to a specified key in the S3 bucket.
- `download_data_from_s3`: This task downloads data from a specified key in the S3 bucket.
3. Flow Definition:
In your flow, you call these tasks to upload data and download it back from S3.
By defining these tasks and using blocks, you ensure that your code is modular and the S3 interactions are isolated. Prefect’s block mechanism helps manage these configurations centrally and securely.
For additional guidance on using blocks in Prefect, you can refer to:
- Prefect 2.x S3 Documentation
- Prefect 3.x Block Usage
Feel free to ask if you need any more help!Noam
09/18/2024, 4:44 PMMarvin
09/18/2024, 4:45 PMboto3
directly, especially in the context of Prefect flows. Here are some reasons why you might prefer using Prefect's S3 bucket block:
### Reasons to Use Prefect's S3 Bucket Block:
1. Modularity and Reusability:
- Prefect blocks encapsulate configuration and connection details, making them easily reusable across multiple tasks and flows.
- Blocks can be saved and loaded by name, promoting DRY (Don't Repeat Yourself) principles.
2. Centralized Configuration:
- Blocks allow you to centralize configuration and credentials, which can be managed and audited separately from your code.
- Updating a block configuration (e.g., changing the S3 bucket name) does not require changes to individual flows.
3. Security:
- Prefect's block system provides a mechanism for securely handling sensitive information, such as AWS credentials, by integrating with Prefect Secret and other secure storage options.
- IAM roles and Prefect’s Secrets management provide an additional layer of security.
4. Integration with Prefect's Environment:
- Prefect blocks are designed to integrate seamlessly with Prefect's orchestration, scheduling, and monitoring features.
- Prefect's UI/CLI can manage and visualize blocks, making it easier to handle infrastructure configurations.
### When to Use boto3 Directly:
1. Fine-Grained Control:
- If you need very specific S3 operations or configurations not encapsulated by Prefect's S3 block, boto3
provides direct access to AWS API features.
2. Complex Operations:
- For complex operations or services not supported by Prefect blocks, boto3
is necessary.
### Example of Using boto3
in Prefect:
If you decide that boto3
better suits your needs, here's how you can integrate it within a Prefect flow, leveraging IAM roles for authentication:
#### Using boto3 Directly:
python
import boto3
from prefect import flow, task
@task
def upload_to_s3(bucket_name: str, key: str, data: bytes):
# Using boto3 client with IAM role authentication
s3 = boto3.client("s3")
s3.put_object(Bucket=bucket_name, Key=key, Body=data)
@task
def download_from_s3(bucket_name: str, key: str) -> bytes:
# Using boto3 client with IAM role authentication
s3 = boto3.client("s3")
response = s3.get_object(Bucket=bucket_name, Key=key)
return response['Body'].read()
@flow
def my_flow():
bucket_name = "my-s3-bucket"
key = "example/key.txt"
data = b"Hello, boto3 with Prefect!"
# Upload data to S3
upload_to_s3(bucket_name, key, data)
# Download and print data from S3
downloaded_data = download_from_s3(bucket_name, key)
print(downloaded_data.decode())
if __name__ == "__main__":
my_flow()
### Conclusion:
Choosing between Prefect's S3 block and boto3
depends on your specific use case and the benefits you want to leverage. Prefect's block system offers modularity, centralized configuration, and security enhancements, which integrate well within the Prefect ecosystem. However, boto3
provides direct access to AWS services if you need more control or specific functionalities.
Feel free to ask if you need more detailed guidance or if there's any specific functionality you're trying to achieve!Noam
09/19/2024, 12:52 PMMarvin
09/19/2024, 12:53 PMGlobalEventLoopThread | prefect._internal.concurrency - Service 'EventsWorker' failed with 1 pending items.
, has been reported by other users. It seems to be a known issue, particularly after upgrading to Prefect 3.x, and might not directly impact the functionality but could cause other downstream issues or task visibility problems.
### Troubleshooting Steps:
1. Ensure Compatibility:
Ensure that all Prefect packages and dependencies are compatible with the version you are using. Sometimes upgrading or downgrading Prefect might resolve the issue.
2. Initialize Prefect Blocks Properly:
Make sure that you're properly initializing and loading the S3 block in your flow code.
3. Check Prefect Server and Agent Logs:
Monitor the Prefect server and agent logs to gather more insights into what might be causing the error.
### Example Code to Enrich Logs and Test Block Initialization:
Here's an enriched version of your flow to provide more debugging information:
python
import boto3
import logging
from prefect import flow, task
from prefect_aws import S3Bucket
logging.basicConfig(level=<http://logging.INFO|logging.INFO>)
@task
def initialize_s3_bucket_block():
try:
# Load the block
s3_bucket = S3Bucket.load("my_s3_bucket")
<http://logging.info|logging.info>("Successfully loaded S3 bucket block.")
return s3_bucket
except Exception as e:
logging.error(f"Error loading S3 bucket block: {e}")
raise
@task
def upload_data_to_s3(s3_bucket, key: str, data: bytes):
try:
s3_bucket.write(key=key, data=data)
<http://logging.info|logging.info>("Successfully uploaded data to S3.")
except Exception as e:
logging.error(f"Error uploading data to S3: {e}")
raise
@task
def download_data_from_s3(s3_bucket, key: str) -> bytes:
try:
data = s3_bucket.read(key=key)
<http://logging.info|logging.info>("Successfully downloaded data from S3.")
return data
except Exception as e:
logging.error(f"Error downloading data from S3: {e}")
raise
@flow
def my_flow():
s3_bucket = initialize_s3_bucket_block()
data = b"Hello, Prefect with S3!"
key = "example/key.txt"
upload_data_to_s3(s3_bucket, key, data)
downloaded_data = download_data_from_s3(s3_bucket, key)
print(downloaded_data.decode())
if __name__ == "__main__":
my_flow()
### Known Issue and Workaround:
According to known issues and task run visibility issues, users encountered similar GlobalEventLoopThread
errors and had success downgrading Prefect to resolve the issues temporarily.
1. Prefect 3.x Known Issue:
Users have reported that downgrading Prefect to an earlier version (e.g., 3.0.0rc18) has helped resolve the issues. Consider testing this workaround.
bash
pip install prefect==3.0.0rc18
2. Prefect 2.x Usage:
If you're open to using Prefect 2.x, you might not encounter this issue. Ensure that you modify your code according to the compatible APIs and blocks.
### Summary:
- Ensure all dependencies are compatible with your Prefect version.
- Properly initialize and handle Prefect blocks within your flow.
- Monitor Prefect server and agent logs for more details.
- Consider downgrading to an earlier version of Prefect if using 3.x, or use Prefect 2.x as an alternative.
For further assistance, you might want to track the issues on the Prefect GitHub repository and report any new findings or patterns you observe. If you need more help, feel free to ask!Noam
09/19/2024, 1:18 PMMarvin
09/19/2024, 1:19 PMprefect-kubernetes
and prefect-aws
to ensure that the Prefect worker can interact with both Kubernetes and AWS services.
### Recommended Docker Image:
You can start with the official Prefect Docker image and extend it to include the necessary packages.
Here is how you can create a custom Docker image:
1. Create a Dockerfile:
Here’s an example of a Dockerfile that includes prefect-kubernetes
and prefect-aws
with Prefect 2.x:
dockerfile
# Start with the official Prefect 2.x image
FROM prefecthq/prefect:2.7.7-python3.9
# Install the necessary packages
RUN pip install prefect-kubernetes prefect-aws
# You can also set an environment variable for the Prefect API key if needed
# ENV PREFECT_API_KEY=your_prefect_api_key
2. Build and Push the Docker Image:
Build the Docker image and push it to your container registry.
sh
# Build the image
docker build -t your-registry/prefect-k8s-aws:latest .
# Push the image to your container registry
docker push your-registry/prefect-k8s-aws:latest
3. Update Your Kubernetes Worker Configuration:
Use the custom image in your Kubernetes worker configuration when you deploy it.
4. Example Kubernetes Job Template:
Update your Kubernetes job template to use the custom Docker image.
yaml
apiVersion: batch/v1
kind: Job
metadata:
labels: "{{ labels }}"
namespace: "{{ namespace }}"
generateName: "{{ name }}-"
spec:
ttlSecondsAfterFinished: "{{ finished_job_ttl }}"
template:
spec:
parallelism: 1
completions: 1
restartPolicy: Never
serviceAccountName: "{{ service_account_name }}"
containers:
- name: prefect-job
image: your-registry/prefect-k8s-aws:latest
env:
- name: PREFECT__CONTEXT__S3_BUCKET
value: "my_s3_bucket"
# Other environment variables as needed
resources:
requests:
memory: "{{ memory }}Mi"
limits:
cpu: "500m"
memory: "512Mi"
serviceAccountName: "your-service-account" # Replace with your service account
### Running the Kubernetes Worker:
Ensure that your worker is set up to use this custom image:
sh
prefect worker start --pool 'my-work-pool' --type kubernetes
For more specific details, you can refer to the Prefect Kubernetes Worker documentation and the Kubernetes deployment guide.
If you encounter any issues or need further assistance, feel free to ask!Noam
09/19/2024, 1:26 PMMarvin
09/19/2024, 1:26 PMprefect-kubernetes
and prefect-aws
packages pre-installed. Prefect provides a base image, which you can extend to include the additional packages you need.
### Creating a Custom Docker Image
To create a custom Docker image that includes both the prefect-kubernetes
and prefect-aws
packages, follow these steps:
1. Create a Dockerfile:
This Dockerfile extends the official Prefect base image to include the additional required packages.
dockerfile
# Use the official Prefect base image
FROM prefecthq/prefect:2.7.7-python3.9
# Install the prefect-kubernetes and prefect-aws packages
RUN pip install prefect-kubernetes prefect-aws
# Optionally, set environment variables if needed
# ENV PREFECT_API_KEY=your_prefect_api_key
2. Build Your Docker Image:
Open a terminal, navigate to the folder containing your Dockerfile, and build the image.
sh
docker build -t your-registry/prefect-k8s-aws:latest .
3. Push the Docker Image to Your Container Registry:
Push the built image to your container registry.
sh
docker push your-registry/prefect-k8s-aws:latest
### Using the Custom Image in Kubernetes
Once you have your custom Docker image, you can use it in your Kubernetes worker and job templates.
### Example Kubernetes Job Template:
Here's an updated example of a Kubernetes job template using your custom Docker image:
yaml
apiVersion: batch/v1
kind: Job
metadata:
labels: "{{ labels }}"
namespace: "{{ namespace }}"
generateName: "{{ name }}-"
spec:
ttlSecondsAfterFinished: "{{ finished_job_ttl }}"
template:
spec:
parallelism: 1
completions: 1
restartPolicy: Never
serviceAccountName: "{{ service_account_name }}"
containers:
- name: prefect-job
image: your-registry/prefect-k8s-aws:latest
env:
- name: PREFECT__CONTEXT__S3_BUCKET
value: "my_s3_bucket"
# Other environment variables as needed
resources:
requests:
memory: "{{ memory }}Mi"
limits:
cpu: "500m"
memory: "512Mi"
serviceAccountName: "your-service-account" # Replace with your service account
### Running the Kubernetes Worker:
Ensure that your worker is configured to use the custom image:
sh
prefect worker start --pool 'my-work-pool' --type kubernetes
By following these steps, you can create a custom Docker image tailored to your needs using the official Prefect image as a base and adding the necessary integrations. This approach lets you leverage both prefect-kubernetes
and prefect-aws
packages seamlessly in your deployment.Noam
09/19/2024, 1:31 PMMarvin
09/19/2024, 1:31 PMprefect-kubernetes
and prefect-aws
packages tailored for Prefect 2.x.
### Dockerfile:
dockerfile
# Use the official Prefect 2.x base image
FROM prefecthq/prefect:2.7.7-python3.9
# Install the prefect-kubernetes and prefect-aws packages
RUN pip install prefect-kubernetes==0.2.15 prefect-aws==0.2.1
# Optionally, set environment variables if needed
# ENV PREFECT_API_KEY=your_prefect_api_key
### Explanation:
- Base Image: We're using the official prefect:2.7.7-python3.9
image, which ensures compatibility with Prefect 2.x.
- Installing Packages: We install prefect-kubernetes
and prefect-aws
using the pip install
command. Version 0.2.15
for prefect-kubernetes
and 0.2.1
for prefect-aws
are specified to ensure compatibility with Prefect 2.x.
### Building Your Docker Image:
1. Save the Dockerfile:
Save the above Dockerfile content into a file named Dockerfile
.
2. Build the Docker Image:
Open a terminal, navigate to the folder containing your Dockerfile, and run the build command:
sh
docker build -t your-registry/prefect-k8s-aws:latest .
3. Push the Docker Image to Your Container Registry:
Push the built image to your container registry:
sh
docker push your-registry/prefect-k8s-aws:latest
### Using the Image in Kubernetes:
Once the image is built and pushed to your registry, you can reference it in your Kubernetes job template.
### Kubernetes Job Template Example:
yaml
apiVersion: batch/v1
kind: Job
metadata:
labels: "{{ labels }}"
namespace: "{{ namespace }}"
generateName: "{{ name }}-"
spec:
ttlSecondsAfterFinished: "{{ finished_job_ttl }}"
template:
spec:
parallelism: 1
completions: 1
restartPolicy: Never
serviceAccountName: "{{ service_account_name }}"
containers:
- name: prefect-job
image: your-registry/prefect-k8s-aws:latest
env:
- name: PREFECT__CONTEXT__S3_BUCKET
value: "my_s3_bucket"
# Other environment variables as needed
resources:
requests:
memory: "{{ memory }}Mi"
limits:
cpu: "500m"
memory: "512Mi"
serviceAccountName: "your-service-account" # Replace with your service account
After following these steps, your custom Docker image will be ready to use in your Prefect-Kubernetes environment with both AWS and Kubernetes integrations.
Feel free to ask if you need further assistance or if there are other specific requirements you have in mind!Noam
10/07/2024, 9:14 AMMarvin
10/07/2024, 9:48 AMenv
.
Here’s an example of how you might adjust your template:
yaml
env:
- name: DEFAULT_VAR
value: "default_value"
{% for key, value in env.items() %}
- name: {{ key }}
value: {{ value }}
{% endfor %}
In this example, DEFAULT_VAR
is your default environment variable, and the template will loop over env
to add any additional ones provided at runtime.
Ensure that the placeholders match whatever templating engine or syntax you're using. If your environment is more complex, or if you're using Prefect to manage these job templates, please let me know which version of Prefect you're using so I can provide more specific advice! If you're using a Prefect feature, there could be relevant capabilities or integrations for handling such templating.Marvin
10/07/2024, 9:48 AMenv
section along with the existing template variable {{ env }}
. This approach allows the default environment variable to be included in addition to any other variables specified at runtime. Here's a basic example of how you could do it:
Suppose you want to add a default environment variable named DEFAULT_ENV_VAR
with a value of defaultValue
. Here's how you can modify your env
section in your Kubernetes job template:
yaml
env:
- name: DEFAULT_ENV_VAR
value: defaultValue
- name: {{ env.name }}
value: {{ env.value }}
This configuration will ensure that your default environment variable is always included in the environment setup of your Kubernetes jobs. By using the template syntax {{ env.name }}
and {{ env.value }}
, you can dynamically include other environment variables that you may set when deploying the job.
It’s important to ensure that the templating engine you’re using to render your Kubernetes manifests supports this syntax and that you are correctly passing any additional environment variables required.
If you want more help with Prefect or specifics about how to integrate this with Prefect's Kubernetes job setup, please let me know your Prefect version so I can provide more accurate guidance!Marvin
10/07/2024, 9:48 AM{{ env }}
specified. Here’s how you can approach it:
1. Modify the Template:
Ensure that the environment variable template section allows for appending or prepending additional environment variables. You may want to add default variables in the template itself.
2. Use Default Values in Jinja or Similar Templating Engines:
You can define default values for variables in the template using Jinja or your chosen templating engine. For instance, in Jinja2, you can use the default
filter to provide a value if none is supplied:
yaml
env:
- name: DEFAULT_VAR
value: "default_value"
{{ env | default([]) }}
3. Concatenating With Defaults:
If using Prefect or any other workflow orchestration tool that supports template rendering, you can concatenate additional default environments into the existing template using Python or similar language integrations.
4. Set Environment Variables in Container:
Another approach is to set environment variables within the container image you're using, which will apply universally unless overridden.
If you are using Prefect to manage your infrastructure, the approach may vary slightly based on the version and features you are using. Please provide more details regarding Prefect, if applicable, so I can assist you further or confirm your Prefect version to apply these changes correctly if using Prefect flows to manage Kubernetes jobs.Noam
10/07/2024, 10:08 AMMarvin
10/07/2024, 10:08 AMjson
{
"env": [
{
"name": "DEFAULT_VAR",
"value": "default_value"
}
{{ env | default([]) }}
]
}
4. Template Placeholders:
Ensure that your placeholders ({{ }}
) are correctly positioned and comply with any JSON formatting requirements. They should integrate seamlessly with the rest of the JSON structure.
If you're managing this with Prefect, please confirm your Prefect version, as there might be specific tools or best practices associated with managing Kubernetes jobs within Prefect flows. This will allow me to provide more tailored advice.