Ansaf
09/11/2024, 8:28 AMOSError: source code not available
when attempting to run a flow via a local jupyter notebook on a dask cluster hosted in aws ecs.Marvin
09/11/2024, 8:28 AMAnsaf
09/11/2024, 8:28 AMAnsaf
09/11/2024, 8:31 AMAnsaf
09/11/2024, 8:32 AMMarvin
09/11/2024, 8:32 AMOSError: source code not available
often occurs when there's a mismatch in the environment or dependencies between your local Jupyter notebook and the Dask cluster in AWS ECS. This problem can arise due to several reasons:
1. Code Availability: The code being executed might not be available on the workers in the Dask cluster. Ensure all necessary code and dependencies are present on the cluster.
2. Environment Differences: There might be differences between the local environment and the cluster environment. Make sure they are synchronized.
### Possible Solutions:
1. Package Code with Flow: Ensure that the code is included with the flow deployment. You might need to package the code and dependencies with your flow.
2. Image Consistency: Use the same Docker image for the Dask workers as you use locally to eliminate environment discrepancies.
3. Network and Permissions: Verify network configurations and ensure the Dask cluster can access all necessary resources.
### Resources
- Troubleshooting Prefect Cloud
- Prefect Dask Usage Guide
These docs might give additional insight into debugging and setting up your environment correctly.
If these steps do not help, you could create an issue on Prefect's GitHub with detailed logs and environment settings for more tailored assistance.Ansaf
09/11/2024, 8:44 AMMarvin
09/11/2024, 8:44 AMOSError
happens.
Prefect should package and send:
1. Flow Code: Code you wrote.
2. Dependencies: Libraries needed.
But sometimes:
- Environment mismatch
- Missing dependencies
- Network issues
Prefect usually good, but for strange problems, check:
1. Docker Images: Make sure same images for local and Dask workers.
2. Network Access: Confirm Dask workers can access everything they need.
3. Custom Task Runners: Might need to configure how code gets sent.
### Resources
- Prefect Dask Usage Guide - setting up Dask with Prefect
- Troubleshoot - general debugging tips
If problem continues, dig deeper or ask Prefect wizards (community or GitHub). Link to Prefect Dask guide might shed light on specific setup needs.Ansaf
09/11/2024, 8:45 AMMarvin
09/11/2024, 8:45 AM--path
option if deploying with Prefect CLI.
3. Result Location: Make sure the location where results are stored is accessible to your local machine and AWS.
Check:
- Are environment variables set correctly?
- Can Dask workers access all necessary network resources?
If still problem, try simpler flow to isolate issue.
### Things to Try
1. Deploy Flow Locally: Run the flow on a local Dask cluster to see if issue replicates.
2. Log Details: Add more logging to identify where it fails.
### Debug Resources
- Prefect Slack Community
- Github Issues for Prefect
If this doesn’t solve, might be time for deep dive or community help.Ansaf
09/11/2024, 8:46 AMMarvin
09/11/2024, 8:46 AMpython
from prefect import flow
@flow
def my_flow():
print("Hello, world!")
my_flow()
### Using Dask
To use Dask as your task runner without a deployment:
python
from prefect import flow
from prefect_dask import DaskTaskRunner
@flow(task_runner=DaskTaskRunner())
def my_dask_flow():
print("Running on Dask!")
my_dask_flow()
### When Deployment is Needed
- Schedule: If you want to schedule flows.
- Flow Storage: If running in distributed, production settings.
### Debugging Your Issue:
Ensure you are running the flow in a way that makes your code accessible to the Dask cluster. If you find doing this in Jupyter troublesome, consider creating a deployment.
### Creating Deployment Example:
1. Deployment Script:
python
from prefect.deployments import Deployment
from prefect_dask import DaskTaskRunner
from my_project import my_flow # Your flow
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-dask-flow",
work_queue_name="my-work-queue",
task_runner=DaskTaskRunner()
)
if __name__ == "__main__":
deployment.apply()
2. Deploy from CLI:
sh
prefect deployment build my_flow.py:my_flow -n my-dask-flow
3. Apply Deployment:
sh
prefect deployment apply my_flow-deployment.yaml
### Further Reading
- Prefect 2.x Documentation
- Dask Task Runner
Try running without deployment first, and setup deployment if needed later.Ansaf
09/11/2024, 8:47 AMMarvin
09/11/2024, 8:47 AMDaskTaskRunner
to distribute tasks.
### Setting Up
1. Define Flow: Write your Prefect flow.
2. Configure Environment: Setup Docker, cloud resources.
3. Create Deployment: Use Prefect CLI or scripts.
### Resources
- Prefect Dask Usage Guide
- Deployments Guide
If data big or tasks slow, distributed production is way to go!Ansaf
09/11/2024, 8:50 AMMarvin
09/11/2024, 8:51 AMpython
from prefect import flow
from prefect_dask import DaskTaskRunner
@flow(task_runner=DaskTaskRunner())
def my_flow():
print("Hello, distributed world!")
if __name__ == "__main__":
my_flow()
2. Deployment Script:
python
from prefect.deployments import Deployment
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-dask-flow",
work_queue_name="my-work-queue"
)
if __name__ == "__main__":
deployment.apply()
3. Store Code:
Make sure your code is available in a place accessible by Dask workers, like S3 bucket or similar.
4. Deploy and Apply:
sh
prefect deployment build my_flow_script.py:my_flow -n my-dask-flow
prefect deployment apply my_flow-deployment.yaml
### Prefect Cloud & Agent:
- Prefect Agent: Ensures your Prefect flows run on the Dask cluster.
- Flow Storage: Use Prefect's storage options (like S3, Docker) to store and distribute code.
### Resources:
- Prefect Deployments Guide
- Prefect Dask Task Runner
For remote Dask clusters, deployment makes sure everything works smoothly and workers have what they need.Ansaf
09/11/2024, 8:56 AMMarvin
09/11/2024, 8:56 AMDockerfile
to define your environment and flow code.
Dockerfile
FROM prefecthq/prefect:latest-python3.9
WORKDIR /app
COPY . /app
RUN pip install -r requirements.txt
2. Configure Deployment Script to Use Docker:
python
from prefect.deployments import Deployment
from prefect.infrastructure.docker import DockerContainer
from my_flow_module import my_flow # Adjust import to your flow file
docker_block = DockerContainer(
image="your-dockerhub-username/your-image-name:latest",
image_registry_url="<http://docker.io|docker.io>",
image_pull_policy="ALWAYS"
)
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-dask-flow",
infrastructure=docker_block,
description="Deployment using Docker storage"
)
if __name__ == "__main__":
deployment.apply()
3. Build and Push Docker Image:
sh
docker build -t your-dockerhub-username/your-image-name:latest .
docker push your-dockerhub-username/your-image-name:latest
### Example: Using S3 Storage
1. Configure Storage in Deployment Script:
python
from prefect.deployments import Deployment
from prefect.filesystems import S3
from my_flow_module import my_flow # Adjust import to your flow file
s3_block = S3.load("my-s3-block") # Create and configure S3 block in Prefect Cloud/Server
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-dask-flow",
storage=s3_block
)
if __name__ == "__main__":
deployment.apply()
2. Ensure S3 Access: Make sure your Dask workers have credentials to access S3.
### Prefect CLI for Deployment
Use Prefect CLI to simplify the deployment creation process:
sh
prefect deployment build my_flow.py:my_flow -n my-dask-flow --infra docker-container --storage s3/my-bucket/my-prefix
prefect deployment apply my_flow-deployment.yaml
### Resources
- Prefect Deployment Storage
- Docker Block Documentation
- S3 Block Documentation
By packaging your flow with Docker or uploading to S3, Dask workers can access your code and run flows smoothly.Ansaf
09/11/2024, 8:57 AMMarvin
09/11/2024, 8:58 AM<https://github.com/your-username/your-repo>
.
your-repo/
├── flows/
│ └── my_flow.py
├── requirements.txt
└── README.md
#### 2. Create GitHub Storage Block in Prefect
Use Prefect Cloud or Prefect Server UI.
1. Navigate to Blocks.
2. Add a new GitHub block.
3. Set the Repository URL to your GitHub repository.
4. Save the block, for example, name it my-github-repo
.
#### 3. Configure Deployment Script
Use the GitHub storage block in your deployment script.
python
from prefect.deployments import Deployment
from prefect.filesystems import GitHub
from flows.my_flow import my_flow # Adjust import to your flow file
github_block = GitHub.load("my-github-repo") # Use the block you created
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-github-flow",
storage=github_block,
entrypoint="flows/my_flow.py" # Path to flow file in the repo
)
if __name__ == "__main__":
deployment.apply()
#### 4. Run Deployment Script
Run the deployment script to register your deployment with Prefect.
sh
python deploy.py
### Example Flow File (flows/my_flow.py
)
python
from prefect import flow
@flow
def my_flow():
print("Hello from GitHub stored flow!")
if __name__ == "__main__":
my_flow()
### Running the Flow
After applying the deployment, you can run your flow using Prefect's UI or CLI.
sh
prefect deployment run my-github-flow
### Resources
- Prefect Deployments Guide
- GitHub Storage Block Documentation
By using GitHub for storage, you ensure that your flow code is easily accessible and version-controlled. Dask workers will pull the code directly from your GitHub repository. Grug hope this helps!Ansaf
09/11/2024, 10:58 AMMarvin
09/11/2024, 10:58 AM<s3://my-prefect-flows/flows/my_flow.py>
.
2. Create and Configure S3 Block in Prefect:
- In the Prefect UI, go to Blocks.
- Add a new S3 block.
- Configure the block with your S3 bucket details.
- Save the block, naming it something like my-s3-storage
.
3. Deployment Script with S3 Storage:
python
from prefect.deployments import Deployment
from prefect.filesystems import S3
from your_flow_module_here import your_flow_function_here # Adjust import
s3_block = S3.load("my-s3-storage") # Load your configured S3 block
deployment = Deployment.build_from_flow(
flow=your_flow_function_here,
name="my-ecs-flow",
storage=s3_block,
entrypoint="my_flow.py" # Path to flow file in S3 bucket
)
if __name__ == "__main__":
deployment.apply()
### Example:
sh
python deploy_s3_script.py
### Docker Storage for ECS
1. Dockerfile: Create a Dockerfile that contains your flow code and environment setup.
2. Build and Push Image: Push the Docker image to Docker Hub or Amazon ECR.
3. Create Docker Storage Block: In Prefect, create a Docker storage block using your image.
### Steps for Docker Storage:
1. Create Dockerfile:
Dockerfile
FROM prefecthq/prefect:latest-python3.9
WORKDIR /app
COPY . /app
RUN pip install -r requirements.txt
2. Build and Push Docker Image:
sh
docker build -t your-dockerhub-username/your-image-name:latest .
docker push your-dockerhub-username/your-image-name:latest
3. Create Docker Block in Prefect:
- In Prefect UI, go to Blocks.
- Add a new Docker Container block.
- Set it up with your Docker image details.
- Save it with a name like my-docker-storage
.
4. Deployment Script with Docker Storage:
python
from prefect.deployments import Deployment
from prefect.infrastructure.docker import DockerContainer
from your_flow_module_here import your_flow_function_here # Adjust import
docker_block = DockerContainer.load("my-docker-storage")
deployment = Deployment.build_from_flow(
flow=your_flow_function_here,
name="my-ecs-docker-flow",
infrastructure=docker_block
)
if __name__ == "__main__":
deployment.apply()
### Resources:
- Prefect Storage Options
- S3 Block Documentation
- Docker Block Documentation
By using S3 or Docker, you ensure your flow code and environment are consistently available to ECS cluster workers. Each option has its strengths:
- S3: Simple, file-based, good for straightforward needs.
- Docker: Comprehensive, ensures complete environment match.Ansaf
09/11/2024, 11:17 AMMarvin
09/11/2024, 11:18 AM<s3://my-prefect-flows/flows/my_flow.py>
2. Configure S3 Block in Prefect:
- Prefect Cloud/Server UI, add S3 block.
3. Deployment Script:
python
from prefect.deployments import Deployment
from prefect.filesystems import S3
# Load your flow
from flows.my_flow import my_flow
s3_block = S3.load("my-s3-storage") # Name of your S3 block
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-ecs-flow",
storage=s3_block,
entrypoint="flows/my_flow.py"
)
if __name__ == "__main__":
deployment.apply()
### Example with Docker:
1. Dockerfile: Create and build Docker image.
2. Push Docker Image: To Docker Hub/ECR.
3. Configure Docker Block in Prefect:
- Add Docker block in Prefect UI.
4. Deployment Script:
python
from prefect.deployments import Deployment
from prefect.infrastructure.docker import DockerContainer
# Load your flow
from flows.my_flow import my_flow
docker_block = DockerContainer.load("my-docker-storage") # Name of Docker block
deployment = Deployment.build_from_flow(
flow=my_flow,
name="my-ecs-flow",
infrastructure=docker_block
)
if __name__ == "__main__":
deployment.apply()
### Resources:
- S3 Storage Setup
- Docker Storage Setup
By packaging to S3 or Docker, Grug make sure your flow works smoothly on ECS. Is simple investment for reliable running.Ansaf
09/11/2024, 11:19 AMMarvin
09/11/2024, 11:19 AMpython
import cloudpickle
from prefect import flow, task
from dask.distributed import Client
# Define a task that can be serialized
@task
def my_task(x):
return x * 2
# Define the flow
@flow
def my_flow():
return my_task(5)
# Serialize the flow with cloudpickle
serialized_flow = cloudpickle.dumps(my_flow)
# Save to file (or could be S3)
with open('my_flow.pkl', 'wb') as f:
f.write(serialized_flow)
### Deserialize and Run (on ECS Workers — Hypothetical)
Remote workers will still need access to the environment and the serialized file:
python
# Deserialize the flow
with open('my_flow.pkl', 'rb') as f:
loaded_flow = cloudpickle.loads(f.read())
# Run the deserialized flow
loaded_flow()
### Real-World ECS Cluster Setup
- Environment: Use Docker to ensure the same environment (more reliable).
- File Access: Use S3 or other shared storage for serialized flows and data.
### Combining Cloudpickle with Docker/S3
You can use cloudpickle as intermediate step but still recommend packaging implementation.
1. Serialize Flow:
- Use cloudpickle
to serialize the flow.
2. Package Serialized Flow:
- Save serialized flow in S3 bucket or include it in Docker image.
3. Ensure Workers Can Access:
- Use Prefect's built-in orchestration to deploy.
### Steps
1. Serialize and Upload to S3:
python
import cloudpickle
import boto3
serialized_flow = cloudpickle.dumps(my_flow)
s3 = boto3.client('s3')
s3.put_object(Bucket='my-bucket', Key='flows/my_flow.pkl', Body=serialized_flow)
2. Worker Deserializes and Runs:
python
import cloudpickle
import boto3
s3 = boto3.client('s3')
response = s3.get_object(Bucket='my-bucket', Key='flows/my_flow.pkl')
serialized_flow = response['Body'].read()
my_flow = cloudpickle.loads(serialized_flow)
my_flow()
### Conclusion
Cloudpickle can serialize code, but for full setup on ECS, still need:
- Consistent environment (Docker good).
- Code availability (S3 good).
For reliable execution, packaging everything ensures all dependencies and code are where they need to be.
### Resources
- Cloudpickle Documentation
- Prefect Deployment Guide
Grug think combo of cloudpickle, Docker, and S3 ensure smooth and reliable distributed execution. Best balance of flexibility and robustness.saf
09/12/2024, 1:07 PMMarvin
09/12/2024, 1:08 PMcreate-react-app
to bootstrap new React project.
Open terminal and run:
sh
npx create-react-app my-simple-react-app
cd my-simple-react-app
#### 3. Basic React App Structure
Let's modify default app to include a simple component:
#### 4. Create Simple Component
Create a new component file MyComponent.js
in src
folder.
`src/MyComponent.js`:
jsx
import React from 'react';
const MyComponent = () => {
return (
<div>
<h1>Hello from MyComponent!</h1>
</div>
);
};
export default MyComponent;
#### 5. Update App Component
Modify App.js
to use MyComponent
.
`src/App.js`:
jsx
import React from 'react';
import './App.css';
import MyComponent from './MyComponent';
function App() {
return (
<div className="App">
<header className="App-header">
<MyComponent />
</header>
</div>
);
}
export default App;
#### 6. Run the App
In the terminal, start the app with:
sh
npm start
Open your web browser and go to <http://localhost:3000>
.
### Simple React App is Ready!
You should see "Hello from MyComponent!" on the screen. Easy, right?
### Summary
- Step 1: Install Node.js and npm.
- Step 2: Bootstrap new React app using create-react-app
.
- Step 3: Create a simple component.
- Step 4: Update App.js
to include the new component.
- Step 5: Run the app and see it in the browser.
### Next Steps
- Styling: Add CSS to make it look pretty.
- More Components: Build more components to make your app functional.
- Routing: Use react-router-dom
for navigation.
Grug see you now have simple React app! Keep building more to become React wizard!