Dijar Vrella
08/12/2024, 2:03 PMMarvin
08/12/2024, 2:03 PM.env
file to the create_docker_container
function, you can reference these variables directly in your Docker configuration. Here’s a brief outline for you:
1. Read the .env
file within your script before creating the Docker container.
2. Pass the variables from the .env
file to the Docker container using the environment
parameter.
You can follow detailed instructions in the Prefect Docker guide available here.
If you need additional code examples or have specific setup requirements, please let me know!Dijar Vrella
08/12/2024, 2:04 PMMarvin
08/12/2024, 2:05 PM.env
file to the create_docker_container
function in your task, you can follow these general steps:
1. Read the environment variables from the .env
file.
2. Pass these variables when creating the Docker container.
Here's an updated version of your task with these steps:
python
import os
from dotenv import load_dotenv
from prefect import task, get_run_logger
from prefect.infrastructure.docker import create_docker_container
# Load environment variables from .env file
load_dotenv()
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
# Read environment variables
env_vars = {
'MY_ENV_VAR1': os.getenv('MY_ENV_VAR1'),
'MY_ENV_VAR2': os.getenv('MY_ENV_VAR2'),
# Add more variables as needed
}
container = await create_docker_container(
image="nginx:latest",
command=["bash", "-c", command_params],
volumes=[
"/data:/data",
],
device_requests=[
{
'Driver': 'nvidia',
'Count': -1,
'Capabilities': [['gpu']],
},
],
group_add=["seedoo"],
detach=True,
tty=True,
stdin_open=True,
cap_add=["SYSLOG"],
shm_size="64G",
environment=env_vars # Pass environment variables
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
This example assumes you have a .env
file with variables like MY_ENV_VAR1
and MY_ENV_VAR2
. Adjust the keys and values as necessary.
For more detailed information, visit the Prefect Docker guide: Link to Guide.Dijar Vrella
08/12/2024, 2:37 PMMarvin
08/12/2024, 2:37 PMDijar Vrella
08/12/2024, 2:43 PMMarvin
08/12/2024, 2:43 PM.env
file dynamically within your flow.py
by using the python-dotenv
library. Here's how you can modify your script to include this functionality:
1. Install the python-dotenv
library:
pip install python-dotenv
2. Modify your flow.py
to read the .env
file and pass the environment variables to your tasks.
Here's the modified flow.py
script:
python
import os
from dotenv import load_dotenv
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
# Load environment variables from .env file
load_dotenv()
@task
async def pull_image():
credentials = {
'username': os.getenv('DOCKER_USERNAME'),
'password': os.getenv('DOCKER_PASSWORD')
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment={
'MY_ENV_VAR1': os.getenv('MY_ENV_VAR1'),
'MY_ENV_VAR2': os.getenv('MY_ENV_VAR2'),
# Add more variables as needed
}
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow():
await pull_image()
await create_container("your-command-parameters")
if __name__ == "__main__":
main_flow()
Explanation:
- Loading Environment Variables: load_dotenv()
reads the .env
file and loads the environment variables.
- Credentials: The pull_image
task reads Docker credentials from the environment variables.
- Environment Variables: The create_container
task constructs an environment
dictionary by loading environment variables dynamically from the .env
file.
Make sure your .env
file includes variables like:
DOCKER_USERNAME=your_docker_username
DOCKER_PASSWORD=your_docker_password
MY_ENV_VAR1=value1
MY_ENV_VAR2=value2
This way, the tasks will be able to read environment variables dynamically from the .env
file.Dijar Vrella
08/12/2024, 2:45 PMMarvin
08/12/2024, 2:45 PM.env
file with sensitive variables in the Docker image when using a Docker worker pool, you can pass the environment variables directly through the deployment configuration.
You can achieve this by setting the environment variables in the deployment's prefect.yaml
file or through the .deploy()
method. Here’s how you can do it:
### Using prefect.yaml
File
1. Create or Update your prefect.yaml
:
yaml
deployments:
- name: my-flow-deployment
description: A deployment using a Docker worker pool
version: 1
tags: []
schedule: {}
work_pool_name: my-docker-pool
parameters: {}
infrastructure_overrides:
env:
DOCKER_USERNAME: "${{ secrets.DOCKER_USERNAME }}"
DOCKER_PASSWORD: "${{ secrets.DOCKER_PASSWORD }}"
MY_ENV_VAR1: "${{ secrets.MY_ENV_VAR1 }}"
MY_ENV_VAR2: "${{ secrets.MY_ENV_VAR2 }}"
2. Use Prefect Secrets for sensitive values which will be injected into your deployment.
### Using .deploy()
Method
python
from prefect.deployments import Deployment
from prefect.infrastructure.docker import DockerContainer
from your_flow_file import main_flow
credentials = {
'DOCKER_USERNAME': 'your-docker-username',
'DOCKER_PASSWORD': 'your-docker-password',
'MY_ENV_VAR1': 'value1',
'MY_ENV_VAR2': 'value2'
}
docker_infra = DockerContainer(
env=credentials,
image="seedooinsights/build:latest"
)
deployment = Deployment.build_from_flow(
flow=main_flow,
name="my-docker-deployment",
infrastructure=docker_infra,
)
if __name__ == "__main__":
deployment.apply()
Explanation:
- Using prefect.yaml
: You set environment variables under infrastructure_overrides
which will be available to your Docker worker.
- Using .deploy()
Method: You can directly pass the environment variables to the Docker container while defining the infrastructure.
Ensure you have the environment variables available securely within your Prefect Cloud or Prefect server environments using Prefect Secrets or by configuring them directly in your deployment configuration.
For a deeper dive into overriding job variables, refer to Prefect's guide here: Overriding Job Variables.Dijar Vrella
08/12/2024, 2:55 PMMarvin
08/12/2024, 2:56 PMflow.py
, you should follow these steps:
1. Use Docker Secrets to manage sensitive data safely.
2. Read the environment variables from the Prefect worker and pass them securely.
### Step 1: Configure Docker Compose to Use Secrets
First, create Docker secrets for your sensitive environment variables.
1. Create Secrets Files (e.g., docker_username
and docker_password
):
echo "your_docker_username" > docker_username
echo "your_docker_password" > docker_password
2. Update docker-compose.yml
to use these secrets:
yaml
version: '3.7'
services:
prefect-worker:
image: your_prefect_worker_image
environment:
- DOCKER_USERNAME_FILE=/run/secrets/docker_username
- DOCKER_PASSWORD_FILE=/run_secrets/docker_password
secrets:
- docker_username
- docker_password
secrets:
docker_username:
file: ./docker_username
docker_password:
file: ./docker_password
### Step 2: Securely Pass Environment Variables
Modify your flow.py
to read the environment variables from the Prefect worker and pass them to the Docker containers it creates:
python
import os
from dotenv import load_dotenv
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
# Load environment variables directly
DOCKER_USERNAME = open('/run/secrets/docker_username').read().strip()
DOCKER_PASSWORD = open('/run/secrets/docker_password').read().strip()
@task
async def pull_image():
credentials = {
'username': DOCKER_USERNAME,
'password': DOCKER_PASSWORD
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment={
'MY_ENV_VAR1': os.getenv('MY_ENV_VAR1'),
'MY_ENV_VAR2': os.getenv('MY_ENV_VAR2'),
# Pass additional environment variables as needed
}
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow():
await pull_image()
await create_container("your-command-parameters")
if __name__ == "__main__":
main_flow()
### Summary
- Docker Secrets: Use Docker secrets to manage sensitive environment variables securely.
- Environment Variables Handling: Ensure that the Prefect worker reads and passes these environment variables securely to other Docker containers it creates.
For more detailed instructions on managing job variables and configuring work pools, refer to Prefect's guide here.Dijar Vrella
08/12/2024, 2:58 PMMarvin
08/12/2024, 2:59 PM.env
file to your Docker containers while using a Prefect worker pool, you can load these variables into the Prefect worker container and then propagate them to the Docker containers created by your flow tasks. Here’s how you can do it:
### Step 1: Update Docker Compose to Include the .env
File
1. Update your docker-compose.yml
to load environment variables from the .env
file:
yaml
version: '3.7'
services:
prefect-worker:
image: your_prefect_worker_image
env_file:
- .env # Load environment variables from .env file
### Step 2: Modify flow.py
to Read and Pass Environment Variables
Since the Prefect worker will already have the environment variables loaded from the .env
file, you can directly access these variables in your tasks.
Here’s an example that demonstrates loading and propagating these environment variables:
python
import os
from dotenv import load_dotenv # Make sure you have `python-dotenv` installed
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
@task
async def pull_image():
# Accessing Docker credentials from environment variables
credentials = {
'username': os.getenv('DOCKER_USERNAME'),
'password': os.getenv('DOCKER_PASSWORD')
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
# Propagate environment variables to the new Docker container
env_vars = {
'MY_ENV_VAR1': os.getenv('MY_ENV_VAR1'),
'MY_ENV_VAR2': os.getenv('MY_ENV_VAR2'),
# Add more variables as needed
}
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment=env_vars # Pass environment variables
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow():
await pull_image()
await create_container("your-command-parameters")
if __name__ == "__main__":
# Ensure the .env file is loaded before running the flow
load_dotenv()
main_flow()
### Summary
- Docker Compose: Ensure the Prefect worker container loads environment variables from the .env
file.
- flow.py: Access environment variables using os.getenv
and propagate them to new Docker containers created by the flow tasks.
This way, your Prefect worker will have access to the environment variables, and you can securely pass them to other Docker containers created within your flow tasks.Dijar Vrella
08/12/2024, 3:01 PMMarvin
08/12/2024, 3:01 PM.env
file is accessible to the Prefect worker container, but you don't want to load the environment variables into the worker container itself, you can read the file directly within your Python script and parse the environment variables dynamically when needed.
Here's how you can achieve this:
### Step 1: Ensure .env File is Accessible
Make sure that the .env
file is mounted or accessible within the Prefect worker container via Docker Compose:
yaml
version: '3.7'
services:
prefect-worker:
image: your_prefect_worker_image
volumes:
- ./env_files/.env:/app/.env # Mount .env file into the container
### Step 2: Modify flow.py
to Read and Parse the .env File
Use the dotenv
package to read and parse the .env
file directly within your tasks:
python
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
@task
async def pull_image():
# Read and parse the .env file directly
with open('/app/.env') as f:
env_vars = dict(line.strip().split('=', 1) for line in f if not line.startswith('#') and line.strip())
# Access Docker credentials from the parsed environment variables
credentials = {
'username': env_vars.get('DOCKER_USERNAME'),
'password': env_vars.get('DOCKER_PASSWORD')
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
# Read and parse the .env file directly
with open('/app/.env') as f:
env_vars = dict(line.strip().split('=', 1) for line in f if not line.startswith('#') and line.strip())
# Propagate environment variables to the new Docker container
container_env_vars = {
'MY_ENV_VAR1': env_vars.get('MY_ENV_VAR1'),
'MY_ENV_VAR2': env_vars.get('MY_ENV_VAR2'),
# Add more variables as needed
}
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment=container_env_vars # Pass environment variables
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow():
await pull_image()
await create_container("your-command-parameters")
if __name__ == "__main__":
main_flow()
### Key Points:
1. Mount .env
File: Ensure the .env
file is mounted into the Prefect worker container.
2. Parse .env
File: Read and parse the environment variables directly from the .env
file within your tasks without loading them into the worker container’s environment.
This approach allows you to keep the sensitive environment variables within the .env
file and only read them when necessary within your tasks.Dijar Vrella
08/12/2024, 3:03 PMMarvin
08/12/2024, 3:04 PM.env
file in your tasks, you can read the entire .env
file and parse it into a dictionary, then pass this dictionary as environment variables to your Docker containers. This way, you won't need to hardcode any specific keys.
Here’s how you can modify the script to achieve this:
1. Ensure .env
File is Accessible:
- Update the docker-compose.yml
to mount the .env
file into the Prefect worker container:
yaml
version: '3.7'
services:
prefect-worker:
image: your_prefect_worker_image
volumes:
- ./env_files/.env:/app/.env # Mount .env file into the container
2. Modify flow.py
to Read and Pass All Environment Variables Dynamically:
python
import os
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
# Utility function to read and parse .env file into a dictionary
def read_env_file(file_path):
env_vars = {}
with open(file_path) as f:
for line in f:
if line.strip() and not line.startswith('#'):
key, value = line.strip().split('=', 1)
env_vars[key] = value
return env_vars
@task
async def pull_image():
# Read and parse the .env file directly
env_vars = read_env_file('/app/.env')
# Access Docker credentials from the parsed environment variables
credentials = {
'username': env_vars.get('DOCKER_USERNAME'),
'password': env_vars.get('DOCKER_PASSWORD')
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
# Read and parse the .env file directly
env_vars = read_env_file('/app/.env')
# Pass all environment variables to the new Docker container
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment=env_vars # Pass all environment variables
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow():
await pull_image()
await create_container("your-command-parameters")
if __name__ == "__main__":
main_flow()
### Summary:
1. Mount .env
File: Ensure your .env
file is mounted in the Prefect worker container.
2. Read and Parse .env
File: Use a utility function to read and dynamically parse all key-value pairs from the .env
file.
3. Pass Environment Variables: Pass the parsed environment variables to the Docker containers in your tasks.
By following this approach, you ensure that all key-value pairs in the .env
file are dynamically read and set in your tasks, providing flexibility and security for managing environment variables.Dijar Vrella
08/12/2024, 3:05 PMMarvin
08/12/2024, 3:06 PMread_env_file
function serves as a utility function and does not need to be a Prefect task. Prefect tasks are designed to encapsulate specific units of work that should be tracked and monitored by Prefect. In this case, read_env_file
is a helper function to read and parse environment variables, and it doesn't need the additional functionality that comes with being a Prefect task.
Here's how you should structure your code:
1. Utility Function: Keep read_env_file
as a normal function.
2. Prefect Tasks: Use Prefect tasks for pull_image
and create_container
.
This approach keeps your code clean and maintains a clear separation between utility functions and tasks that are tracked by Prefect.
Here’s the updated implementation without making read_env_file
a task:
### `flow.py`:
python
import os
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
# Utility function to read and parse .env file into a dictionary
def read_env_file(file_path):
env_vars = {}
with open(file_path) as f:
for line in f:
if line.strip() and not line.startswith('#'):
key, value = line.strip().split('=', 1)
env_vars[key] = value
return env_vars
@task
async def pull_image():
# Read and parse the .env file directly
env_vars = read_env_file('/app/.env')
# Access Docker credentials from the parsed environment variables
credentials = {
'username': env_vars.get('DOCKER_USERNAME'),
'password': env_vars.get('DOCKER_PASSWORD')
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
# Read and parse the .env file directly
env_vars = read_env_file('/app/.env')
# Pass all environment variables to the new Docker container
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment=env_vars # Pass all environment variables
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow():
await pull_image()
await create_container("your-command-parameters")
if __name__ == "__main__":
main_flow()
### Summary:
- Utility Function: read_env_file
is a utility function used within tasks but is not itself a task.
- Prefect Tasks: Only use Prefect tasks for pull_image
and create_container
, which encapsulate the main units of work that should be tracked.
This way, you follow best practices by keeping utility functions lightweight and focused, while leveraging Prefect tasks for more significant operations that benefit from Prefect's tracking and monitoring capabilities.Dijar Vrella
08/12/2024, 3:08 PMMarvin
08/12/2024, 3:09 PM.env
file path based on an input flag, similar to how command_params
is handled. Here’s how you can structure your script to achieve this:
1. Modify your flow to accept an additional parameter for the .env
file path.
2. Read the .env file dynamically within the pull_image
and create_container
tasks based on the provided file path.
### Modified `flow.py`:
python
import os
from prefect import task, flow, get_run_logger
from prefect.infrastructure.docker import pull_docker_image, create_docker_container
# Utility function to read and parse .env file into a dictionary
def read_env_file(file_path):
env_vars = {}
with open(file_path) as f:
for line in f:
if line.strip() and not line.startswith('#'):
key, value = line.strip().split('=', 1)
env_vars[key] = value
return env_vars
@task
async def pull_image(env_file_path):
# Read and parse the .env file dynamically based on input path
env_vars = read_env_file(env_file_path)
# Access Docker credentials from the parsed environment variables
credentials = {
'username': env_vars.get('DOCKER_USERNAME'),
'password': env_vars.get('DOCKER_PASSWORD')
}
logger = get_run_logger()
<http://logger.info|logger.info>("Pulling the latest image from the private repository...")
image = await pull_docker_image(
repository="seedooinsights/build",
tag="latest",
docker_registry_credentials=credentials
)
<http://logger.info|logger.info>(f"Pulled image: {image}")
return image
@task
async def create_container(env_file_path, command_params):
logger = get_run_logger()
<http://logger.info|logger.info>("Creating a container with the specified flags...")
# Read and parse the .env file dynamically based on input path
env_vars = read_env_file(env_file_path)
# Pass all environment variables to the new Docker container
container = await create_docker_container(
image="seedooinsights/build:latest",
command=["bash", "-c", command_params],
environment=env_vars # Pass all environment variables
)
<http://logger.info|logger.info>(f"Created container: {container}")
return container
@flow
async def main_flow(env_file_path: str, command_params: str):
await pull_image(env_file_path)
await create_container(env_file_path, command_params)
if __name__ == "__main__":
# Example of how you might want to pass the file path and command params dynamically
env_file_path = '/app/.env' # Or dynamically assign from some input flag
command_params = "your-command-parameters"
main_flow(env_file_path, command_params)
### Summary:
1. Dynamic .env File Path: The env_file_path
parameter is passed to both the pull_image
and create_container
tasks.
2. Utility Function Usage: The read_env_file
utility function reads and parses the .env
file location dynamically based on the input path.
3. Flow Parameters: The main_flow
accepts the .env
file path and command_params
as parameters to dynamically manage configuration.
This allows you to specify and use different .env
files dynamically, based on the input flag you provide when running the flow.Dijar Vrella
08/12/2024, 3:34 PMMarvin
08/12/2024, 3:35 PM--params
flags; instead, you should use a single --params
flag with all necessary parameters included in one JSON object.
Here's how you can do it:
1. Combine Parameters into a Single JSON Object:
json
{
"param1": "value1",
"param2": "value2",
"command_params": "your-command-parameters",
"env_file_path": "/app/.env"
}
2. Pass the Combined JSON Object to the prefect deployment run
Command:
sh
prefect deployment run 'pull-and-run-image/train_flow' --params '{"param1": "value1", "param2": "value2", "command_params": "your-command-parameters", "env_file_path": "/app/.env"}'
### Example for Combining Parameters
Here's an example of how you might combine multiple parameters and pass them to the Prefect deployment:
sh
# Example JSON payload
json_payload='
{
"param1": "value1",
"param2": "value2",
"command_params": "your-command-parameters",
"env_file_path": "/app/.env"
}'
# Run Prefect deployment with combined parameters
prefect deployment run 'pull-and-run-image/train_flow' --params "$json_payload"
By combining all parameters into a single JSON object, you can ensure that the deployment script receives and uses all the specified parameters correctly.
For more details, you can refer to the Prefect documentation on parameters usage here.