Miguel Moncada
05/23/2024, 8:44 AMpandas
is installed among other deps:
docker run -ti europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:latest
root@42107936d492:/opt/prefect# pip freeze
# ...
pandas==2.2.2
In my deployment I'm defining the image and the ImagePullPolicy
to 'Always'
which I can see it's correctly applied from the job configuration:
k get pod -n prefect amigurumi-grebe-hmq8s-78mwz -o yaml
image: europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:latest
imagePullPolicy: Always
name: prefect-job
Yet I get this error when the flow runs:
Flow could not be retrieved from deployment.
Traceback (most recent call last):
File "", line 940, in exec_module
File "", line 241, in _call_with_frames_removed
File "/opt/prefect/data-canopy/data-flows/dataflows/flows/projects_observability_export_flow.py", line 4, in
import pandas as pd
ModuleNotFoundError: No module named 'pandas'
Marvin
05/23/2024, 8:45 AMpandas
, despite it seemingly being installed.
Here are the steps to troubleshoot and resolve the issue:
1. Verify Image Contents:
Ensure that the pandas
package is included in your Docker image. You can check this by running the image locally:
bash
docker run -ti europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:latest /bin/bash
pip freeze | grep pandas
2. Update Docker Image:
If pandas
is not present, update your Dockerfile to include it. Ensure you rebuild and push the updated image to your repository:
Dockerfile
FROM prefecthq/prefect:latest
RUN pip install pandas
3. Tagging and Versioning:
Use a specific tag or commit SHA for your Docker image to avoid potential issues with the latest
tag not being updated properly.
yaml
image: europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:commit-sha
imagePullPolicy: Always
4. Check Prefect Deployment Configurations:
Verify your Prefect deployment configuration to ensure it points to the correct image.
yaml
storage:
- module: prefect.filesystems.GCS
bucket: YOUR_BUCKET
key: PATH/TO/FLOW
infrastructure:
job:
docker:
image: europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:commit-sha
5. Re-deploy the Flow:
After making these changes, re-deploy your flow using the updated image.
To follow up further on how to manage and debug Kubernetes deployments in Prefect, refer to the Prefect Kubernetes deployment guide: Prefect Kubernetes Guide.
Let's hope that fixes it. But, you know, with my luck, it probably won't.
Feel free to reach out if you have any more questions.Miguel Moncada
05/23/2024, 8:46 AMdocker run -ti europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:latest /bin/bash
pip freeze | grep pandas
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
root@825ae754ac21:/opt/prefect# pip freeze | grep pandas
geopandas==0.14.4
pandas==2.2.2
And the flow had been redeployed. I also tried pushing a different image and using it, it did not work either.Marvin
05/23/2024, 8:47 AMModuleNotFoundError
arise.
- Checking the cluster logs might show additional errors.
- Link to Issue
2. Deployment with Custom Image Issues:
- Using a custom image in KubernetesJob
might not work as expected unless infra_overrides
are used.
- If the image is not respected, the default Prefect image is used instead.
- Issue Example
3. GitHub Block Issues:
- Using certain GitHub blocks for deployment can lead to errors.
- Ensure that the blocks and configurations are properly set up.
- Another Issue Example
### Potential Solutions and Next Steps:
1. Verify KubernetesJob Configuration:
Make sure your deployment YAML or Python script includes infra_overrides
to enforce the use of the correct image. Here's an example setup:
yaml
job:
docker:
image: europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:latest
infra_overrides:
image: europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:latest
2. Check for Concurrent Flow Issues:
There might be issues running concurrent flows using the same setup. Try running flows sequentially or isolating the problematic flow to identify issues.
3. Use Specific Tags:
Ensure that you're tagging images explicitly with versions rather than using latest
. It helps in avoiding issues arising from using stale images.
yaml
image: europe-docker.pkg.dev/cambium-earth/prefect-runners-staging/default:<specific-tag>
imagePullPolicy: Always
4. Review and Debug Logs:
Always look at the detailed logs from both Prefect and Kubernetes. They often provide deeper insights into what might be going wrong.
### Deploy the Updated Image and Configuration
Redeploy the flow with these updated configurations and tagged images, ensuring all dependencies are correctly included in the environment.
Following these steps and suggestions should help in narrowing down and resolving the issue. Hang in there, and if the universe decides to not be completely indifferent, these steps might just work.
For more detailed guidelines on deploying with Kubernetes on Prefect, refer to the Prefect Kubernetes Guide.