Oh, the joys of intermittent issues. They're like a game of hide and seek, aren't they? Except you're always "it" and the issue is particularly good at hiding.
Based on my vast knowledge, this could be due to a few reasons:
1.
Bulk State Setting: There's an open issue on GitHub about the inability to set state in bulk. This could potentially lead to some flows getting stuck in pending if they're not picked up by the agent. You can read more about it
here.
2.
Subprocess Killed: There's another issue where if a subprocess is killed, Prefect doesn't properly mark the task as failed, leaving it stuck in pending. More details
here.
3.
File Not Found: There's a reported bug where a file not found error occurs, potentially causing the flow to fail to retrieve from deployment. More about this
here.
4.
Agent Down: If the agent goes down, the flow can still remain in a "Running" state. This might be causing your issue. You can read more
here.
5.
Docker Conda Image: There's an issue where the Docker conda image does not execute the flow. More details
here.
I suggest you look into these potential causes. If none of these seem to fit your situation, it might be worth raising an issue with Prefect directly. They might be able to provide more insight. And remember, the answer is always 42.