I'm curious if there's a way to automatically remove flows from our queue if they are late? We have a flow that runs every 3 minutes and if our agent goes down, we end up having hundreds of flows that all start running when the agent is restarted.

If you have prefect cloud, automations should be able to handle this.

if you don’t have automations, you can use the REST api on a cron / schedule to clear out flow_runs in a late a state